Look into the following table to gather ideas about the programs offered under different faculties and their course duration. You can also find the Annamalai University Courses and fee structure listed here for their respective courses.
| Faculty | Courses Offered | Course duration | Approximate fees (in INR) |
| Faculty of Marine Sciences | B.Voc. | 3 years | 1.1 lakhs |
| B.F.Sc | 4 years | 1.2 lakhs | |
| M.Sc. | 2 years | 26,295 to 31,295 | |
| M.Phil. | 1 year | Nil | |
| Ph.D. | 3 years | Nil | |
| Faculty of Indian Languages | M.A. | 2 years | 8,100 to 55,000 |
| M.Phil. | 2 years | Nil | |
| Ph.D. | 3 years | Nil | |
| D.Litt. | 2 years | Nil | |
| Faculty of Education | B.Ed. | 2 years | 43,210 |
| B.P.Ed. | 2 years | 23,380 | |
| M.P.Ed. | 2 years | 30,845 | |
| M.Ed. | 2 years | 46,210 | |
| M.Sc. | 2 years | 23,200 to 35,200 | |
| M.Phil. | 2 years | Nil | |
| M.P.T | 2 years | 40,200 | |
| Certificate | 2 years | 17,200 | |
| Ph.D. | 3 to 5 years | Nil | |
| Faculty of Engineering & Technology | Dip. | 2 years | |
| B.E. | 4 years | 28,525 to 35,575 | |
| M.E. | 2 years | 30,560 to 34,560 | |
| B.Pharm. | 4 years | 20,680 | |
| B.Voc (Instrumentation/ Catering) | 3 years | 18,700 | |
| M.Pharm. | 2 years | 54,060 | |
| Pharm.D. | 6 years | 18,230 | |
| Ph.D. | 3 years | Nil | |
| Faculty of Fine Arts | B.F.A. (Music/Dance) | 4 years | 3,795 |
| M.F.A | 2 years | 4,495 | |
| Ph.D. | 3 years | Nil | |
| Isaikalaimani | 4 years | 3,295 | |
| Nattiyakalaimani | 4 years | 3,295 | |
| Faculty of Agriculture | B.Sc. | 4 years | 38,630 to 121,200 |
| M.Sc. | 2 years | 38,260 | |
| M.B.A. | 2 years | 36,260 | |
| Ph.D. | 3 years | Nil | |
| Faculty of Dentistry | B.D.S. | 5 years | 3,50,370 |
| M.D.S. | 6 months to 2 years | Nil | |
| Ph.D. | 3 years | Nil | |
| Faculty of Medicine | M.B.B.S. | 5.5 years | 5,54,370 |
| M.D. | 3 years | Nil | |
| B.Sc. | 4 years | 56,580 | |
| M.Sc. | 2 years | 71,470 | |
| B.P.T. | 4.6 years | 33,480 | |
| M.P.T. | 2 years | 1,24,460 | |
| Ph.D. | 3 years | Nil |